Online training: Snakemake Hackathon

22 May 2024

This is a collaboration between CSC, Aalto University, PDC, ENCCS, and UPPMAX

Abstract: Snakemake is a common entry tool in the world of computational workflows, especially in Bioinformatics. The tool is designed to support you in setting up a workflow system, which opposed to a “your favorite language here” script, helps you keep track of your processes. For Snakemake, the user has to define inputs and outputs and the tool will figure out the order of steps and which steps can be run in parallel.

This Hackathon is open for all, free of charge and independent of field of Science and it is all about getting your own workflows to the supercomputer (Puhti, Mahti, Lumi or other).

Time: 22 May, 09:00-14:00.

For detailed information, please go to